Dog Diarrhea After Changing Food: How to Check for Allergies

Sensitive two-year-old Yorkshire Terrier Louie came home at around 60 days old. At first, he ate Royal Canin X-Small Puppy food without major issues. Wanting to provide better nutrition, I switched his food fairly early.

Soon after, persistent diarrhea started. We received probiotics from the vet, but the symptoms lasted more than a week. At that point, I had to figure out whether this was simple food transition diarrhea or something closer to a food allergy. This post organizes what to check first when diarrhea appears after changing dog food.




1. Why Diarrhea Happens After Changing Dog Food

Diarrhea after a food change is more common than many owners expect. While food allergies are often suspected first, they are not the most common cause.

In many cases, diarrhea happens because the digestive system has not adapted yet. Changes in fat content, protein sources, or ingredient composition can overwhelm digestive enzymes, especially in puppies whose gut is still immature.

This is why most dog food packages recommend a gradual transition period.




2. When Diarrhea Might Indicate an Allergy

Not all diarrhea points to an allergy, but certain patterns deserve closer attention.

If diarrhea occurs repeatedly with the same food or protein source and clearly improves when that food is stopped, allergy becomes more likely. When digestive symptoms are accompanied by itching, ear inflammation, or increased tear staining, allergy should be considered more seriously rather than simple digestion issues.




3. How to Check for Food Allergies During a Food Change

Time and observation are essential. One or two days of loose stool is not enough to diagnose an allergy.

If diarrhea lasts longer than a week, or if symptoms consistently improve when a specific food is removed, it becomes reasonable to examine ingredients more closely. During this process, simplified diets or single-protein foods can help narrow down potential triggers.




4. Was Louie’s Diarrhea an Allergy?

In Louie’s case, diarrhea did not appear only with a specific protein. The protein source remained the same, yet symptoms continued across food changes.

The diarrhea started quickly after switching foods and persisted despite adjustments. Later, once his digestion stabilized, the same proteins caused no problems—even now, his diet rotates regularly without issue.

Looking back, his digestive trouble was more likely due to gut immaturity combined with rapid food changes. His diet shifted from Royal Canin X-Small Puppy (4 weeks) to Orijen (1 week), then immediately to Stella & Chewy’s Chicken & Salmon Puppy Dinner Patties. The rich fat content and frequent changes likely overwhelmed his system.




5. When to Use Probiotics or Pro-Kolin

For Louie, standard probiotics alone were not enough. Once intestinal irritation progresses beyond mild imbalance, probiotics may not resolve diarrhea.

After introducing Pro-Kolin, his stools stabilized, and his gut gradually recovered. Since then, if diarrhea begins and does not resolve quickly, I use Pro-Kolin earlier rather than waiting. Early intervention has prevented longer digestive disruption.




Reflections

Louie’s experience taught me to look at timing and patterns before assuming allergies. Observing when symptoms begin, how they respond to food removal, and how the body reacts over time helps avoid unnecessary worry and prolonged discomfort. For dogs with sensitive digestion, understanding this flow alone can make food transitions far less stressful—for both the dog and the owner.